Index A | B | C | D | E | F | G | I | L | M | N | P | R | S | T | U A add_absolute_calculation() (cinnabar.femap.FEMap method) add_experimental_measurement() (cinnabar.femap.FEMap method) add_measurement() (cinnabar.femap.FEMap method) add_relative_calculation() (cinnabar.femap.FEMap method) B bootstrap_statistic() (in module cinnabar.stats) C calculate_kendalls_tau() (in module cinnabar.stats) calculate_mue() (in module cinnabar.stats) calculate_nrmse() (in module cinnabar.stats) calculate_pearson_r() (in module cinnabar.stats) calculate_predictive_index() (in module cinnabar.stats) calculate_r2() (in module cinnabar.stats) calculate_rae() (in module cinnabar.stats) calculate_rmse() (in module cinnabar.stats) check_weakly_connected() (cinnabar.femap.FEMap method) cinnabar.classification_metrics module cinnabar.cli module cinnabar.conversion module cinnabar.estimators module cinnabar.femap module cinnabar.measurements module cinnabar.plotlying module cinnabar.plotting module cinnabar.stats module computational (cinnabar.measurements.Measurement attribute) compute_fraction_best_ligands() (in module cinnabar.classification_metrics) convert_observable() (in module cinnabar.conversion) CSVData (class in cinnabar.femap) D degree (cinnabar.femap.FEMap property) DG (cinnabar.measurements.Measurement attribute) draw_graph() (cinnabar.femap.FEMap method) E ecdf_plot() (in module cinnabar.plotting) ecdf_plot_all_DDGs() (in module cinnabar.plotting) ecdf_plot_DDGs() (in module cinnabar.plotting) ecdf_plot_DGs() (in module cinnabar.plotting) estimate() (cinnabar.estimators.Estimator method) Estimator (class in cinnabar.estimators) EstimatorResult (class in cinnabar.estimators) F FEMap (class in cinnabar.femap) form_edge_matrix() (in module cinnabar.stats) from_csv() (cinnabar.femap.FEMap class method) from_experiment() (cinnabar.measurements.Measurement class method) from_networkx() (cinnabar.femap.FEMap class method) G generate_absolute_values() (cinnabar.femap.FEMap method) get_absolute_dataframe() (cinnabar.femap.FEMap method) get_all_to_all_relative_dataframe() (cinnabar.femap.FEMap method) get_cycle_closure_dataframe() (cinnabar.femap.FEMap method) get_cycle_closure_edge_statistics_dataframe() (cinnabar.femap.FEMap method) get_estimator_metadata() (cinnabar.femap.FEMap method) get_relative_dataframe() (cinnabar.femap.FEMap method) I is_true_ground() (cinnabar.measurements.ReferenceState method) L labelA (cinnabar.measurements.Measurement attribute) labelB (cinnabar.measurements.Measurement attribute) ligands (cinnabar.femap.FEMap property) M main() (in module cinnabar.cli) Measurement (class in cinnabar.measurements) mle() (in module cinnabar.stats) MLEEstimator (class in cinnabar.estimators) MLEEstimatorResult (class in cinnabar.estimators) module cinnabar.classification_metrics cinnabar.cli cinnabar.conversion cinnabar.estimators cinnabar.femap cinnabar.measurements cinnabar.plotlying cinnabar.plotting cinnabar.stats N n_edges (cinnabar.femap.FEMap property) n_ligands (cinnabar.femap.FEMap property) n_measurements (cinnabar.femap.FEMap property) P pair_plot() (in module cinnabar.plotting) plot_all_DDGs() (in module cinnabar.plotting) plot_bar() (in module cinnabar.plotlying) plot_cycle_closure() (in module cinnabar.plotting) plot_DDGs() (in module cinnabar.plotting) plot_DGs() (in module cinnabar.plotting) R read_csv() (in module cinnabar.femap) ReferenceState (class in cinnabar.measurements) S source (cinnabar.measurements.Measurement attribute) T temperature (cinnabar.measurements.Measurement attribute) to_legacy_graph() (cinnabar.femap.FEMap method) to_networkx() (cinnabar.femap.FEMap method) TYPE_CHECKING (in module cinnabar.estimators) (in module cinnabar.femap) U uncertainty (cinnabar.measurements.Measurement attribute)